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Falkowski, P. G., Godfrey, L. 2008. Electrons, life and the evolution of Earth's oxygen cycle. Philosophical Transactions of the Royal Society.doi:10.1098/rstb.2008.0054

Richards, G. P., Watson, M. A., Crane III E. J., Brut, I. G., Bushek, D. 2008. Shewanella and Photobacterium spp. in oysters and seawater from the Delaware Bay. Applied and Environmental Microbiology. 74(11): 3323-3327.

Bushek, D., Kornbluh, A., Wang, H., Guo, X., Debrosse, G., Quinlan, J. 2008. Fertlization interference between Crassostrea ariakensis and Crassocstrea virginica: A gamete sink? Journal of Shellfish Research. 27(3): 593-600.

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Falkowski, P. G., Fenchel, T., Delong, E. F. 2008. The microbial engines that drive Earth's biogeochemical cycles. Science 320: 1034-1039

Akob, D. M., Mills, H. J., Thomas, T. M., Kerkhof, L., Stucki, J. W., Anastacio, A. S., Chin, K., Kusel, K. Palumbi, A. V., Watson, D B., Kostka, J. E. 2008. Functional diversity and electron donor dependence of microbial populations capable of U(VI) reduction in radionuclide-contaminated subsurface sediments. Applied and Environmental Microbiology 74: 3159-3170.

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Quan, T. M., B. van de Schootbrugge, M. P. Field, Y. Rosenthal, and P.G. Falkowski (2008), Nitrogen isotope and trace metal analyses from the Mingolsheim core (Germany): Evidence for redox variations across the Triassic-Jurassic boundary, Global Biogeochem. Cycles, 22, GB2014, doi:10.1029/2007GB002981.

Lutz, R. A., Shank, T. M., Luther, G., Vetriani, C., Tolstoy, M., Nuzzio, D. B., Moore, T. S., Waldhauser, F., crespo-medina, M., Chatziefthimiou, A. D., Annis, E. R., Reed, A. J. 2008. Interrelationships between vent fluid chemistry, temperature, seismic activity, and biological structure at a mussel-dominated, deep-sea hydrothermal vent along the East Pacific Rise. Journal of Shellfish Research 27(1): 177-190.

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Wang, Y. , X. Guo. 2008. Chromosomal mapping of major ribosomal RNA genes in the dwarf surfclam ( Mulinia lateralis Say ). Journal of Shellfish Research , 27 (2):307-311.

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LaVigne, M., M. P. Field, E. Anagnostou, A. G. Grottoli, G. M. Wellington, and R. M. Sherrell (2008).  Skeletal P/Ca tracks upwelling in Gulf of Panamá coral: Evidence for a new seawater phosphate proxy, Geophysical Research Letters, 35, L05604, http://dx.doi.org/10.1029/2007GL031926 6 March 2008

Ramey, P.2008. Life history of a dominant polychaete, Polygordius jouinae , in inner continental shelf sands of the Mid-Atlantic Bight, USA. Marine Biology . http://dx.doi.org/10.1007/s00227-008-0936-9

Dighton, J., Tugay, T., Zhdanova, N. 2008. Fungil and ionizing radiation from radionuclides. FEMS Microbiology Letters. DOI:10.1111/j.1574-6968.2008.01076.x

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Bidle, K.D. and S.J. Bender. Iron starvation and culture age activate metacaspases and programmed cell death in the marine diatom, Thalassiosira pseudonana. Eukaryotic Cell 7(2): 223-236

Buskek, D., Landau B., Scarpa, E. 2008. Perkinsus chesapeaki in stout razor clams Tagelus plebeius from Delaware Bay. Diseases of Aqautic Organisms 78: 243-247.

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Altieri, K. E., Seitzinger, S. P., Carlton, A. G., Turpin, B. J., Klein, G. C., Marshall, A. G. 2008. Oligomers formed through in-cloud methylglyoxal reactions: Chemical composition, properties, and mechanisms investigated by ultra-high resolution FT-ICR mass spectrometry. Atmospheric Environment 42; 1476-1490.

Shi, T., Falkowski, P. G. 2008. Genome evolution in cyanobacteria: the stable core and the variable shell. Proceedings National Academy of Sciences 105(7): 2510-2515, www.pnas.org/cgl/doi/10.1073/pnas.0711165105

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Chant, R. J., S. M. Glenn, E. Hunter, J. Kohut, R. F. Chen, R. W. Houghton, J. Bosch, and O. Schofield 2008. Bulge Formation of a Buoyant River Outflow. Journal Geophysical Research 113, C01017, doi:10.1029/2007JC004100.

Able, K.W., T.M. Grothues, S.M. Hagan, M.E. Kimball, D.M. Nemerson and G.L. Taghon. 2008. Long-term response of fishes and other fauna to restoration of former salt hay farms: multiple measures of restoration success. Reviews in Fish Biology and Fisheries 18:65-97.

Nix-Stohr, S., Moshe, R., Dighton, J. 2008. Effects of propagule density and survival stategies on establishment and growth: further investigations in the Phylloplane fungal model system. Microbial Ecology 55: 38-44. doi: 10.1007/s00248-007-9248-8.

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Kim, Y. and E.N. Powell. 2007. Distribution of parasites and pathologies in sentinel bivalves: NOAA Status and Trends 'Mussel Watch' Program. Journal of Shellfish Research 26:1115-1151.

Sackett, D.K., K.W. Able and T.M. Grothues. 2007. Dynamics of summer flounder, Paralichthys dentatus, seasonal migrations based on ultrasonic telemetry. Estuarine Coastal and Shelf Sciences 74:119-130.

Ng, C., K. W. Able and T. M. Grothues. 2007. Habitat use, site fidelity and movement of adult striped bass in a southern New Jersey estuary based on mobile acoustic telemetry. Transactions of the American Fisheries Society 136:1344-1355.

Able, K.W., P.J. Clarke, R.C. Chambers and D.A. Witting. 2007. Transitions in the morphological features, habitat use, and diet of young-of-the-year goosefish Lophius americanus. Fishery Bulletin 105:457-469.

Grothues, T. M. and K. W. Able. 2007. Scaling acoustic telemetry of bluefish /Pomatomus saltatrix /in an estuarine observatory: detection and habitat use patterns. Transactions of the American Fisheries Society 136:1511-1510.

Kimball, M.E. and K. W. Able. 2007. Tidal utilization of nekton in Delaware Bay restored and reference intertidal salt marsh creeks. Estuaries and Coasts 30(6):1075-1087.

Carlton, A.G., B.J. Turpin, K. E. Altieri, S. Seitzinger, A. Reff, H. Lim, and B. Ervans. 2007. Atmospheric Oxalic Acid and SOA Production from glyoxal: Results of aqueous photooxidation experiments. Atmospheric Environment 41:7588-7602

Cardona-Marek, T., Schaefer, J., Ellickson, K., Barkay, T., Reinfelder, J. R. 2007. Mercury speciation, reactivity, and bioavailability in a highly contaminated esturay, Berry's creek, New Jersey Meadowlands. Environmental Science Technology. 41: 8268-8274.

Castelao, R., Barth, J. A. 2007. The role of wind stress curl in jet seperation at a Cape. Journal of Physical Oceanography 37: 2652-2671.

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Wang, L., H. Zhang, L. Song and X. Guo. 2007. Loss of allele diversity in introduced populations of the hermaphroditic bay scallop Argopecten irradians . Aquaculture , 271:252-259.

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Gaas, B. M., Ammerman, J. W. 2007. Automated high resolution ectoenzyme measurements: instrument development and deployment in three trophic regimes. Limnology and Oceanography Methods 5: 463-473.

Liu, Y., J. R. Key, J. A. Francis and X. Wang, 2007: Possible causes of decreasing cloud cover in the Arctic winter, 1982-2000,Geophysical Research Letters, 34, L14705,doi:10.1029/2007GL030042

White, D., Hinzman, L., Alessa, L., Cassano, J., Chamber, M., Falkner, K., Francis, J., Gutowski, W. J., Holland, M., Holmes, M. R., Hunington, H., Kane, D., Kliskey, A., Lee, C., McClelland, J., Peterson, B., Rupp, S. T., Straneo, F., Steele, M., Woodgate, R., Yang, D., Yoshikawa, Zhang, T. 2007. The arctic freshwater system: Changes and impacts. Journal of Geophysical Research vol 122, G04S54, doi: 10.1029/2006JG000353

Francis, J.A. and E. Hunter, 2007: Changes in the fabric of the Arctic’s greenhouse blanket, Environ. Res. Lett., 2, doi:10.1088/1748-9326/2/4/045011.

Miller, J. R., Chen, Y., Russell, G. L., Franccis, J. A. 2007. Future regime shift in feedbacks during Arctic winter. Geophysical Research Letters 34, L23707, doi:10.1029/2007GL03826

Finkel, Z. V., Sebbo, J., Feist-Burkhardt, S., Irwin, A. J., Katz, M. E., Schofield , O ., Young, J. R., Falkowski, P. G. 2007. A universal driver of macroevolutionary change in the size of marine phytoplankton over the Cenozoic. Proceedings of the National Academy of Sciences 104(51): 20416-20420 . doi/10.1073/pnas.0709381104.

Dagg, M. J., Ammerman, J. W., Amon, R. M., Gardner, W. S., Green, R. E., Lohrenz, S. E. 2007. A review of water column processes influencing hypoxia in the northern Gulf of Mexico. Estuaries and Coasts 30(5): 735-752.

Oliver, M. J., M. Moline, C. Mobley, L. K. Sundman, and O . Schofield 2007. Bioluminescence in a complex coastal environment: 2. Prediction of bioluminescent source depth from spectral water-leaving radiance, Journal of Geophysical Research doi:10.1029/2007JC004136

Moline, M. A. , M. J. Oliver, C. D. Mobley, L. Sundman, S. M. Blackwell, T. Bergmann, W. P. Bissett, J. Case, E. H. Raymond, Schofield , O . 2007. Bioluminescence in a complex coastal environment I: Temporal dynamics of night-time water-leaving radiance . Journal of Geophysical Research. 112, DOI:10.1029/2007JC004138

Litchman E., Klausmeier C. A., Schofield O ., Falkowski P. G. 2007. The role of functional traits and trade-offs in structuring phytoplankton communities: scaling from cellular to ecosystem level. Ecology Letters. 10: 1170-1181

Sylvan, J. B., Quigg, A., Tozzi, S., Ammermann, J. W. 2007. Eutrophication-induced phosphorus limitation in the Mississippi River plume: Evidence from fast repetition rate fluorometry. Limnology and Oceanography 52(6); 2679-2685.

Francis, J., Hunter, E. 2007. Drivers of declining sea ice in the Arctic winter: A tale of two seas. Geophysical Research Letters Vol. 34, L17503, doi:10.1029/2007GL030995.

Falkowski, P. G., Oliver, M. J. 2007. Errantum. Mix and match: how climate selects phytoplankton. 5: 813-815 doi: 10.1038/nmicro1751

Berman-Frank, I., Rosenberg, G., Levitan, O., Haramaty, L., Mari, X. 2007. Coupling between autocatalytic cell death and transparent exopolymeric particle production in the marine cyanobacteria Trichodesmium. Environmental Microbiology. 9: 1415-1422.

Berman-Frank, I., Quigg, A., Finkel, Z., Irwin, A., Haramaty, L. 2007. Nitrogen-fixation strategies and Fe requirements in cyanobacteria. Limnology and Oceanography. 52(5): 2260-2269.

Andrianasolo, E. H., Haramaty, L., Degenhardt, K., Mathew, R., White, E., Lutz, R., Falkowski, P. 2007. Induction of apoptosis by diterpenes from the soft coral Xenia elongata. Journal of Natural Products. 70: 1551-1557.

Shi, T., Sun, Y., Falkowski, P. G. 2007. Effects of iron limitation on the expression of metabolic genes in the marine cyanobacterium Trichodesmium erythraeum IMS101. Environmental Microbiology 9(12): 2945-2956.

Jenny, M. J., R. W. Chapman, A. Mancia, Y.A. Chen, D. J. McKillen, H. Trent, P. Lang, J.-M. Escoubas, E. Bachere, V. Boulo, Z. J. Liu, P. S. Gross, C. Cunningham, P. M. Cupit, A. Tanguy, X. Guo, D. Moraga, I. Boutet, A. Huvet, S. D. Guise, J. S. Almeida, G. W. Warr. A cDNA microarray for Crassostrea virginica and C. gigas . Marine Biotechnology , 9, 577–591.

Qin, Y., X. Liu, H. Zhang, G., Zhang, X. Guo. 2007. Identification and mapping of AFLP markers linked to shell color in bay scallop, Argopecten irradians (Lamarck, 1819). Marine Biotechnology , 9:66-73.

Quilang, J., S. Wang, P. Li, J. Abernathy, E. Peatman, Y. Wang, L. Wang, Y. Shi, R. Wallace, X. Guo, and Z. Liu. 2007. Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers. BMC Genomics , 8:157.

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Wang, Y. and X. Guo. 2007. Chromosomal mapping of major ribosomal rRNA genes in the hard clam ( Mercenaria mercenaria ) using fluorescence in situ hybridization. Marine Biology , 150:1183-1189.

Wang, Y. and X. Guo. Development and characterization of EST-SSR markers in the eastern oyster Crassostrea virginica . Marine Biotechnology , 9, 500–511.

National research Council Report (Falkowski one of many authors) 2007. The Role of Theory in Advancing 21st Centry Biology: Catalyzing Transformative Research. National Academy of Sciences Report in Brief..

Falkowski, P. G., Oliver, M. J. 2007. Mix and match: How climate slects phytoplankton. Nature Reviews Microbiology 5: 813-818.

Kennish, M. J. and A. R. Townsend. 2007. Nutrient enrichment and estuarine eutrophication. Ecological Applications, 17(5) Supplement: 1-2.

Kennish, M. J., S. B. Bricker, W. C. Dennison, P. M. Glibert, R. J. Livingston, K. A. Moore, R. T. Noble, H. W. Paerl, J. M. Ramstack, S. Seitzinger, D. A. Tomasko, and I. Valiela. 2007. Barnegat Bay-Little Egg Harbor Estuary: case study of a highly eutrophic coastal bay system. Ecological Applications, 17(5) Supplement: 3-16.

Gao, Y., M. J. Kennish, and A. McGuirk-Flynn. 2007. Atmospheric deposition of nitrogen to New Jersey coastal waters and its implications for nutrient enrichment and biotic impacts. /Ecological Applications/, 17(5) Supplement: 31-41.

Kennish, M. J. (Editor). 2007. Eutrophication of estuarine and shallow coastal marine systems. Ecological Applications, 17(5) Supplement. 196 pp.

Kustka, A., Allen, A., Morel, F. M. M. 2007. Sequence analysis and transcriptional regulation of iron acquistion genes in two marine diatoms. Journal of Phycology 43: 715-729.

Bushek, D., Heidenreich M., Porter D. 2007. The effects of several common anthropogenic contaminats on proliferation of the parasitic oyster pathogen. Marine Environmental Research 64: 535-540.

Able, K.W. and T.M. Grothues. 2007. Diversity of estuarine movements of striped bass (/Morone saxatilis/): a synoptic examination of an estuarine system in southern New Jersey. Fishery Bulletin 105:426-435.

Chant, R.J., W.R. Geyer, R.H Houghton, E. Hunter and J. Lerzcak 2007. Estuarine boundary layer mixing processes: insights from dye experiments. Journal of Physical Oceanography Vol. 37 No 7 1859-1877

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Choi, B.-J. and J. L. Wilkin, 2007. The effect of wind on the dispersal of the Hudson River plume. Journal of Physical Oceanography, 37, 1878-1897.

Bidle, K. D., Lee, S., Marchant, D. R., Falkowski, P. G. 2007. Fossil genes and microbes in the oldest ice on Earth. Proceedings of national Academy of Sciences. 104(33):13455-13460.

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Able, K.W. and T.M. Grothues. 2007. An approach to understanding habitat dynamics of flatfishes: advantages of biotelemetry. Journal of Sea Research 58:1-7.

Coen, L. D., Brumbaugh, R. D., Bushek, D., Grizzle, R., Luckenbach, M. W., Posey, M. H., Powers, S. P., Tolley, S. G. 2007. Ecosystem services related to oyster restoration. Marine Ecology Progress Series. 341:303-307.

Taylor, D.L., R. Nichols And K.W. Able. 2007. Habitat selection and quality for multiple cohorts of young of the year Bluefish /Pomatomus
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Kimball, M. E. and K. W. Able. 2007. Nekton utilization of intertidal salt marsh creeks: tidal influences in natural Spartina, invasive Phragmites, and marshes treated for Phragmites removal. Journal of Experimental Marine Biology and Ecology 346:87-101.

Wawrik, B., Kutliev D., Abdivasiena U. A., Kukor J. J., Zylstra G. J., Kerkhof, L. 2007. Biogeography of actinomycete communities and Type II polyketide synthase genes in soils collected in New Jersey and central Asia. applied and environmental microbiology doi:10.1128/AEM.02611-06 p. 2982-2989.

Benitez-Nelson C. R., Bidigare R. R., Dickey T. D., Landry M. R., Leonard C. L., Brown S. L., Nencioli F., Rii Y. M., Maiti K., Becker J. W., Bibby T. S., Black W., Cai W., Carlson C. A., Chen F., Kuwahara V. S., Mahaffey C., McAndrew P. A., Quay P. D., Rappé M. S., Selph K. E., Simmons M. P., Yang E. J. 2007. Mesoscale Eddies Drive Increased Silica Export in the Subtropical Pacific OceanScience: 316(5827): 1017-1021.

McGillicuddy, Jr. D., Anderson, L. A., Bates N. R., Bibby T., Buesseler K. O., Carlson C. A., Davis C. S., Ewart C., Falkowski P. G., Goldthwait S. A., Hansell D. A., Jenkins W. J., Johnson R., Kosnyrev V. K., Ledwel J. R.l, Li Q. P., Siegel D. A., Steinberg 2007. Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Blooms. Science: 316(5827):1021-1026.

Finkel, Z. V., Quigg, A. S., Chiambi, R., Schofield , O ., Falkowski, P. G. 2007. Phylogenetic diversity in Cd:P regulation by marine phytoplankton. Limnology and Oceanography 52(3): 1131-1138.

Ildefonse, B., Rona, P. A., Blackman, D. 2007. Drilling the crust at Mid-Ocean Ridges: An "in depth" perspective. Oceanography 20(1): 66-77.

Able, K. W., J. H. Balletto, S. M. Hagan, P. R. Jivoff, and K. Strait. 2007. Linkages between salt marshes and other nekton habitats in Delaware Bay, USA. Reviews in Fisheries Science 15:1-61.

Schofield, O., Kohut, J., Aragon , D., Creed, L., Graver, J., Haldeman, C., Kerfoot, J., Roarty, H., Jones, C., Webb, D., Glenn, S. M. 2007. Slocum Gliders: Robust and ready. Journal of Field Robotics. 24(6): 1-14. DOI: 10:1009/rob.20200

Hagan, S.M., S.A. Brown and K.W. Able. 2007. Production of mummichog (Fundulus heteroclitus): response in marshes treated for common reed (Phragmites australis) removal. Wetlands (27) 1: 54-67.

Rountree, R.A. and K.W. Able. 2007. Spatial and temporal habitat use patterns for salt marsh nekton: implications for ecological functions.
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Able, K.W., S.M. Hagan, K. Kovitvongsa, S.A. Brown and J.C. Lamonaca.. 2007. Piscivory by the mummichog (Fundulus heteroclitus): Evidence from the laboratory and salt marshes. Journal of Experimental Marine Biology and Ecology 345:26-37.

Edson, J., T. Crawford, J. Crescenti, T. Farrar, N. Frew, G. Gerbi, C. Helmis, T. Hristov, D. Khelif, A. Jessup, H. Jonsson, M. Li, L. Mahrt, W. McGillis, A. Plueddemann, L. Shen, E. Skyllingstad, T. Stanton, P. Sullivan, J. Sun, J. Trowbridge, D. Vickers, S. Wang, Q. Wang, R. Weller, J. Wilkin, A. J. Williams III, D. Yu, and C. Zappa 2007. The Coupled Boundary Layers and Air-Sea Transfer Experiment in Low Winds, Bulletin of the American Meteorological Society, 88(3), 341-356.

Valle-Levinson, A., K. Holderied, C. Li, and R. J. Chant 2007. Subtidal flow structure at the turning region of a wide outflow plume, Journal of Geophysical Research 112, C04004, doi:10.1029/2006JC003746.

Chatziefthimiou, A D., Crespo-Medina, M., Wang, Y., Vetriani, C., Barkay, T. 2007. The isolation and initial characterization of mercury resistant chemolithotrophic thermohilic bacteria from mecury rich geothermal springs. Extremohiles doi 10.1007/s00792-007-0065-2.

Hugler, M., Huber, H., Molyneaux, L., Vetriani, C., Sievert, S. 2007. Autrophic CO2 fixation via the reductive tricarboxylic acid cycle in different lineages within the phylum Aquificae: evidence for two ways of citrate cleavage. Environmental Microbiology 9: 81-92.

Oliver, M., Petrov, D., Ackerley, D., Falkowski, P. G. Schofield , O.2007. The mode and tempo of genome size evolution in eukaryotes. Journal of Genome Research. doi/10.1101/gr.6096207.

Bidle, K. D., Haramaty, L., Barcelos-Ramos, J., Falkowksi, P. G. 2007. Viral activation and recruitment of metacaspases in the unicellular coccolithophore Emiliana huxleyi. Proceedings of the National Academy of Sciences doi:/10.1073/pnas.0701240104 104:6049-6054.

Uhle M. E., E. L. Sikes , S. D Nodder, and C. A. Pilditch, 2007. Sources and diagenetic status of organic matter in the Hauraki Gulf, New Zealand: Evidence from the carbon isotopic composition of D- and L-amino acids. Organic Geochemistry , 38, 440-457.

Schofield, O., Bosch, J., Glenn, S. M., Kirkpatrick, G., Kerfoot, J., Moline, M., Oliver, M., Bissett, W. P. 2007. Bio-optics in integrated ocean observing networks: potential for studying harmful algal blooms. In Real Time Coastal Observing Systems for Ecosystem Dynamics and Harmful Algal Blooms. Babin, M,. Roesler, C. and J. J. Cullen (Eds). UNESCO, Paris. 85-108.

Pearson, P. N., van Dongen, B.E., Nicholas, C. J., Pancost, R.D., Schouten, S., Singano, J.M. and Wade, B.S. 2007. Stable warm tropical climate through the Eocene epoch. Geology, 35 (3): 211-214.

Wade, B.S., Berggren, W. A. and Olsson, R. K. 2007. The biostratigraphy and paleobiology of Oligocene planktonic foraminifera from the equatorial Pacific Ocean (ODP Site 1218). Marine Micropaleontology, 62: 167-179.

Allen, D. M., haertel-Borer, S. S., Milan, B. J., Bushek, D., Dame, R. F. (2007). Geomorphological determinants of nekton use of intertidal salt marsh creeks. Marine Ecology Progress Series. 329: 57-71.

Hunter, E., R. Chant, L. Bowers, S. Glenn, and J. Kohut (2007), Spatial and temporal variability of diurnal wind forcing in the coastal ocean, Geophysical Research Letters, 34, L03607, doi:10.1029/2006GL028945.

Hare, J.A. and K.W. Able. 2007. Mechanistic links between climate and fisheries along the east coast of the United States: explaining population outbursts of Atlantic croaker (Micropogonias undulatus). Fisheries Oceanography 16:1, 31-45

Sullivan, M.C., K.W. Able, J.A. Hare and H.J. Walsh. 2006. Anguilla rostrata glass eel ingress into two U.S. east coast estuaries:
patterns, processes and implications for adult abundance. Journal of Fish Biology 69:1081-1101.

Ragueneau, O., S. Schultes, K. Bidle, P. Claquin, and B. Moriceau. 2006. Si and C interactions in the world ocean: Importance of ecological processes and implications for the role of diatoms in the biological pump. Global Biogeochemical Cycles 20: GB4SO2, doi:10.1029/2006GB002688.

Roarty, H.J. and Bruno M.S. 2006. Laboratory Measurements of Bed Load Sediment Transport Dynamics. Journal of Waterway, Port, Coastal and Ocean Engineering, Vol. 132, No. 3, 199-211

Kohut, J.T., Roarty, H.J. and Glenn S.M. 2006. Characterizing Observed Environmental Variability with HF Doppler Radar Surface Current Mappers and Acoustic Doppler Current Profilers: Environmental Variability in the Coastal Ocean” IEEE Journal OF Oceanic Engineering, Vol. 31, No. 4, October 2006, 876-884

Tugay, T., Zhdanov, M. N., Zheltonozhsky, V., Sadovnikov, L., Dighton, J. 2006. The influence of ionizing radiation on spore germination and emergent hyphal growth response reaction of microfungi. Mycologia. 98: 521-527.

Gray, D. M., Dighton, J. 2006. Mineralization of forest litter nutrients by heat and combustion. Soil Biology & Biochemistry 38; 1469-1477.

Zheng, H., G. Zhang and X. Guo. 2006. Heterosis between two stocks of the bay scallop, Argopecten irradians irradians Lamarck (1819). J. Shellfish Res. , 25(3):807-812.

Yang, H. and X. Guo. 2006. Tetraploid induction by inhibiting mitosis I with heat shock, cold shock and nocodazole in the hard clam Mercenaria mercenaria (Linnaeus, 1758). Marine Biotechnol. , 8:501-510.

Alcivar-Warren, A., D. Meehan-Meola, Y. Wang , , X. Guo, L. Zhou, J. Xiang, S. Moss, S. Arce, W. Warren, Z. Xu and K. Bell. 2006. Isolation and mapping of telomeric pentanucleotide (TAACC) n repeats of the Pacific whiteleg shrimp, Penaeus vannamei , using fluorescence in situ hybridization. Marine Biotechnology , 8:467-480.

Liu, X., X. Liu, X. Guo, Q. Gao and G. Zhang. 2006. A preliminary genetic linkage map of the Pacific abalone Haliotis discus hannai Ino. Marine Biotechnology , 8:386-397.

Zheng, H., G. Zhang, X. Liu and X. Guo. 2006. Sustained response to selection in an introduced population of the hermaphroditic bay scallop Argopecten irradians irradians Lamarck (1819). Aquaculture , 255:579-585.

Wilkin, J., and W. Zhang, (2006), Modes of mesoscale sea surface height and temperature variability in the East Australian Current, Journal of Geophysical Research, 112, C01013, doi:10.1029/2006JC003590

Fennel, K., J. Wilkin, J. Levin, J. Moisan, J. O'Reilly, and D. Haidvogel, 2006: Nitrogen cycling in the Middle Atlantic Bight: Results from a three-dimensional model and implications for the North Atlantic nitrogen budget. Global Biogeochemical Cycles, 20, GB3007, doi:10.1029/2005GB002456.

He, R. and J. L. Wilkin, (2006), Barotropic tides on the southeast New England shelf: A view from a hybrid data assimilative modeling approach.
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Ellin, R., Buskek, D. 2006. Adaptation of ray's fluid thioglycollate medium assay to detect and quantify planktonic stages of Perkinsus spp. parasites. J. of Shellfish Res. 25(3): 1037-1042.

Taylor, D.L. and K.W. Able. 2006. Cohort dynamics of summer-spawned bluefish as determined by length-frequency and otolith microstructure analyses. Trans. Am. Fish. Soc. 135: 955-969

Davidson , E.A. , and S. Seitzinger .  2006.  The Enigma of Progress in Denitrification Research.   Ecological Applications.16(6):2057-2063.

Altieri, K. E. , A. G. Carlton, B. J. Turpin , and S. P. Seitzinger . 2006. Formation of oligomers in cloud processing: reactions of isoprene oxidation products. Environmental Science and Technology. 40: 4956-4960.

Taylor, D.L., P.M. Rowe and K. W. Able. 2006. Habitat use of the inner continental shelf off southern New Jersey by summer-spawned bluefish (/Pomatomus saltatrix/). Fishery Bulletin 104: 593-604.

Wiegner, T.N. , S.P. Seitzinger , P.M. Glibert , and D.A. Bronk . 2006. Bioavailability of dissolved organic nitrogen and carbon from nine rivers in the eastern United States . Aquatic Microbial Ecology 43:277-287.

Glibert, P.M.,  J. Harrison, C.  Heil, and S. P. Seitzinger .  2006. Escalating worldwide use of urea – a global change contributing to coastal eutrophication. Biogeochemistry, 77:441-463  DOI 10.1007/s10533-3070-0.

Lerczak, J. A., Geyer, W. R., Chant, R. J. (2007). Mechanisms driving the time-dependent salt flux in a partially stratified estuary. Journal of Physical Oceanography 36: 2296-2311.

Wollheim, W. M., C. J. Vorosmarty, B. J. Peterson, S. P. Seitzinger, and C. S. Hopkinson.  2006.  Relationship between river size and nutrient removal.  Geophysical Research Letters  33: L06410 DOI:10.1029/2006GL025845.

Carlton , A.G. , B.J. Turpin , H. Lim , K.E. Altieri, and S. Seitzinger . 2006.  Link between isoprene and secondary organic aerosol (SOA): Pyruvic acid oxidation yields low volatility organic acids in clouds. Geophysical Research Letters  33: L06822 DOI 10.1029/2005GL025374

Seitzinger, S.P. ,  J. Harrison, J. Bohlke , A. Bouwman , R. Lowrance , B. Peterson , C. Tobias , and G. Van Drecht . 2006. Denitrification across landscapes and waterscapes: a synthesis. Ecological Applications. 16(6):2064-2090.

Pälike, H., Norris, R.D., Herrle, J.O., Wilson, P.A., Coxall, H.K., Lear, C.H., Shackleton, N.J., Tripati, A.K. and Wade, B.S. 2006. The heartbeat of the Oligocene climate system. Science, 314 (5807): 1894-1898.

Premoli Silva, I., Wade, B.S. and Pearson, P.N. 2006. Chapter 7: Taxonomy of Globigerinatheka and Orbulinoides. In: Pearson, P.N., Olsson, R.K., Huber, B.T., Hemleben, C. and Berggren, W.A. (Eds.), Atlas of Eocene Planktonic Foraminifera, Cushman Foundation Special Publication, 41: 169-212.

Berggren, W. A., Pearson, P. N., Huber, B. T. and Wade, B. S. 2006. Chapter 9: Taxonomy, Biostratigraphy and Phylogeny of Eocene Acarinina. In: Pearson, P. N., Olsson, R. K., Huber, B. T., Hemleben, C and Berggren, W. A. (Eds.), Atlas of Eocene Planktonic Foraminifera, Cushman Foundation Special Publication, 41: 257-326.

Nicholas, C.J., Pearson, P.N., Bown, P.R., Dunkley Jones T., Huber, B.T., Karega, A., Lees, J.A., McMillan, I. K., O'Halloran, A., Singano, J.M., Wade, B.S. 2006. Stratigraphy and sedimentology of the Upper Cretaceous to Paleogene Kilwa Group, Tanzania. Journal of Africa Earth Sciences, 45: 431-466.

Sylvan, J., Dortch, Q., Nelson, D. M., Maierbrown, A., Morrison W., Ammerman, J. W. 2006. Phosphorus limits phytoplankton growth on the Louisiana Shelf during the period of hypoxia formation. Environ. Sci. Technol., 40, 7548-7553.

Able, K.W., S.M. Hagan and S.A. Brown. 2006. Habitat use, movement and growth of young-of-the-year Fundulus spp. in southern New Jersey salt marshes: comparisons based on tag/recapture. Journal of Experimental Marine Biology and Ecology 335 (2006) 177-187.

Able, K.W. and J.C. Lamonaca. 2006. Scale formation in selected western North Atlantic flatfishes. Journal of Fish Biology 68: 1679-1692.

Sullivan, M.C., R.K. Cowen, K.W. Able, and M.P. Fahay. 2006. Assessing habitat suitability of young-of-the-year benthic fishes on the NY Bight continental shelf using a research submersible. Continental Shelf Research 26:1551-1570.

Hunter, K.L., D.A. Fox, L.M. Brown, and K.W. Able. 2006. Responses of resident marsh fishes to stages of Phragmites australis invasion in three mid-Atlantic estuaries, U.S.A. Estuaries and Coasts 29(3):487-498.

Hunter, K.L., M. Fox and K.W. Able. 2006. Habitat influences on reproductive allocation and growth of the mummichog (Fundulus
heteroclitus) in a coastal salt marsh. Marine Biology (published electronically - MABI-D-06-00017.1)

Francis, J.A. and E. Hunter, 2006: New insight into the disappearing Arctic sea ice, Eos Tranactions of the AGU, 87, 509-524

Litchman, E., Klausmeier, C. A., Miller, J. R., Schofield, O., Falkowski, P. G. 2006. Multi-nutrient, multi-group model of the present and future oceanic phytoplankton communities. Biogeosciences 3: 585-606.

Kato, S., N.G. Loeb, P. Minnis, J.A. Francis, and T.P. Charlock, 2006: Seasonal and interannual variations of top-of-atmosphere irradiance and cloud cover over polar regions derived from the CERES data set. Geophys. Res. Lett., VOL. 33, L19804, doi:10.1029/2006GL026685.

Liu, Y. J.R. Key, A. Schweiger, and J.A. Francis, 2006: Characteristics of Satellite-Derived C lear-Sky Atmospheric Temperature Inversion Strength in the Arctic, 1980–96. J. Clim., 19, 4902

Lerczak, J., W.R. Geyer and R.J. Chant 2006. Mechanisms driving the time-dependent salt flux in partially stratified estuary.  Journal of Physical Oceanography, Vol. 36, No. 12, pages 2283–2298.

Shaked, Y., C. de Vargas (2006). Pelagic photosymbiosis: rDNA assessment of diversity and evolution of dinoflagellate symbionts and planktonic foraminiferal hosts. Marine Ecology progress series 325: 59-71.

Quijón, P. A.,· J. P. Grassle, · J. M. Rosario (2006). Naticid snail predation on early post-settlement surfclams (Spisula solidissima) on the inner continental shelf of New Jersey, USA. Marine Biology DOI 10.1007/s00227-006-0399-9

Wolfe-Simon, F., Trey, A., Starovoytov, V., Reinfelder, J. R., Schofield , O ., Falkowski, P. G. (2006). The localization and role of MnSOD in diatoms. Plant Physiology DOI:10.1104/pp.106.088963

Allam, B. and S. E. Ford. 2006. Effects of the pathogenic Vibrio tapetis on defence factors of susceptible and non-susceptible bivalve species : I. Changes in hemocytes following in vitro challenge. Fish and Shellfish Immunology 20:374-383.

Allam, B., C. Paillard, M. Auffret, and S. Ford . 2006. Effects of the pathogenic Vibrio tapetis on defence factors of susceptible and non-susceptible bivalve species :  II. Cellular and biochemical changes following in vivo challenge. Fish and Shellfish Immunology 20:384-397.

Ford, S.E., M. Cummings and E.N. Powell.  2006. Estimating mortality in natural assemblages of oysters.  Estuaries and Coasts 29:361-374.

Ford, S.E. and R. Smolowitz.  2006.   Perkinsus marinus infection cycles in the parasite's newly established northern range. Marine Biology. DOI 10.1007/s00227-006-0454-6

Ford, S. E. and M. M. Chintala 2006. Northward expansion of a marine parasite: Testing the role of cold adaptation. J. Experimental Marine Biology and Ecology. 339:226-235.

Nordstrom, K.F., N.L. Jackson, D.R. Smith and R.G. Weber. 2006. Transport of horseshoe crab eggs by waves and swash on an estuarine beach: implications for foraging shorebirds. Estuarine Coastal and Shelf Science, 70: 438-448.

Reed, A.J., Lutz, R.A., and Vetriani, C. (2006). Vertical Distribution and Diversity of Bacteria and Archaea in Sulfide and Methane-Rich Cold Seep Sediments Located at the Base of the Florida Escarpment. Extremophiles 10:199-211.

McGuinness, L. M, Salganik, M., Vega, L., Pickering, K. D. and Lee J. Kerkhof. (2006). Replicability of Bacterial Communities in Denitrifying Bioreactors as Measured by PCR/T-RFLP Analysis. Environmental Science and Techology 40: 509-515.

Rona, P. A., Bemis, K. G., Jones, C. D., Jones, C. D., Jackson, D. R., Mitsuzawa, K., Silver, D. (2006). Entrainment and bending in a major hydrothermal plume, Main Endeavour Field, Juan de Fuca Ridge. Geophysical Research letters 33(L19313) doi:10.1029/2006GK0272211.

Finkel, Z. V., Quigg, A. S., Raven, J. A., Reinfelder, J. R., Schofield , O ., Falkowski P. G.(2006). Irradiance and the elemental stoichiometry of marine phytoplankton. Limnology and Oceanography 51(6): 2690-2701.

Ma H, Grassle JP, Chant JC (2006) Vertical distribution of bivalve larvae along a cross- shelf transect during summer upwelling and downwelling. Marine Biology 149:1123-1138

Ma, H., J. P. Grassle & J. M. Rosario (2006). Initial recruitment and growth of surfclams (Spisula solidissima Dillwyn) on the inner continental shelf of New Jersey. Journal of Shellfish Research 25(2):481-489.

Ramey, P.A. , Fiege, D. and Leander B.S. 2006. A new species of Polygordius (Polychaeta: Polygordiidae) from the inner continental shelf and in bays and harbours of the north-eastern United States . Journal of the Marine Biological association of the United Kingdom . 86:1025-1034.

Kim, Y. and E.N. Powell. 2006. Relationships among parasites and pathologies in sentinel bivalves: NOAA Status and Trends 'Mussel Watch' Program. Bulletin of Marine Science 79:83-111.

Serreze, M.C. and J. Francis, 2006: The Arctic amplification debate.Climatic Change, doi: 10.1007/s10584-005-9017-y.

Serreze, M.C. and J. Francis, 2006: The Arctic on the Fast Track of Change, Weather, 61, 65-69.

Shane, P. A., E. L. Sikes, and T. P. Guilderson (2006), Tephra beds in deep-sea cores off northern New Zealand: implications for the history of Taupo Volcanic Zone, Mayor Island, and White Island volcanoes, Journal of Volcanic and Geothermal Research , 154 , 276-290.

Kim, Y., K. A. Ashton-Alcox, and E. N. Powell. 2006. Histological Techniques for Marine Bivalve Molluscs: Update. NOAA Technical Memorandum NOS NCCOS 27, Silver Spring, MD. 76 pp. Location URL: http://www.ccma.nos.noaa.gov/publications/HistopathTechMemoFinal.pdf

Quijón , P. A. , Grassle, J. P., · Rosario, J. M. (2006) Naticid snail predation on early post-settlement surfclams (Spisula solidissima) on the inner continental shelf of New Jersey, USA. Marine Biology DOI 10.1007/s00227-006-0399-9

Craig, S. E., Lohrenz, S. E., Lee, Z., Mahoney, K. L., Kirkpatrick, G. J., Schofield, O., Steward, R. 2006. Use of hyperspectral remote sensing reflectance for detection and assessment of the harmful alga, Karenia brevis. Applied Optics 45(21): 5414- 5425.

Leander, B. S., Ramey, P. 2006. Cellular Identity of a Novel Small Subunit rDNA Sequence Clade of Apicomplexans: Description of the Marine Parasite Rhytidocystis polygordiae n. sp. (Host: Polygordius sp., Polychaeta). Journal of Eukaryote Microbiology 53(4): 280-291.

Schofield, O., J. Kerfoot, K. Mahoney, M. Moline, M. Oliver, S. Lohrenz, and G. Kirkpatrick. 2006. Vertical migration of the toxic dinoflagellate Karenia brevis and the impact on ocean optical properties. Journal Geophysical Research, 111, C06009, doi:10.1029/2005JC003115

Song, L., W. Xu, C. Li, H. Li, L. Wu, J. Xiang and X. Guo. 2006. Development of expressed sequence tags from the bay scallop, Argopecten irradians irradians. Marine Biotechnology, 8(2):161-169.

Yu, Z. and X. Guo. 2006. Identification and mapping of disease-resistance QTL in the eastern oyster, Crassostrea virginica Gmelin. Aquaculture,
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Gruber, D.F, Simjouw, J-P. Seitzinger, S.P. and G. L. Taghon. 2006. Dynamics and Characterization of Refractory Dissolved Organic Matter Produced by a Pure Bacterial Culture in an Experimental Predator-Prey System. Applied and Environmental Microbiology 72(6):4184-4191.

Iglesias-Rodriguez, D., Schofield , O ., Batley, J., Probert, I. , Medlin, L.K., Hayes, P.K. 2006. Extensive intraspecific genetic diversity in the marine coccolithophorid Emiliania huxleyi : The use of microsatellite analysis in marine phytoplankton populations studies. Journal of Phycology doi: 10.1111/j.1529-8817.2006.00231. 1-12.

Wade, B. S. and Bown, P. R. 2006. Calcareous nannofossils in extreme environments: The Messinian Salinity Event. Palaeogeography, Palaeoclimatology, Palaeoecology, 233 (3-4): 271-286.

Irwin, A., Finkel, Z., Schofield , O ., Falkowski P. 2006. Scaling-up from nutrient physiology to the size-structure of phytoplankton communities. Journal of Plankton Research 28: 1-13.

Yang, H. and X. Guo . 2006. Polyploid induction by heat shock-induced meiosis and mitosis inhibition in the dwarf surfclam Mulinia lateralis Say. Aquaculture, 252:171-182.

J. Levin, D.B. Haidvogel, B. Chua, A.F.Bennett, M. Iskandarani 2006. Euler-Lagrange Equations for the Spectral Element Shallow Water System. Ocean Modeling, 12, 2006, 348-377

Able, K.W. and J.T. Duffy-Anderson. 2006. Impacts of piers on juvenile fishes and selected invertebrates in the lower Hudson River. In the Hudson River Estuary. Cambridge University Press. New York, pp.428-440.

Able, K.W., M.P. Fahay, D.A. Witting and R.S. McBride. 2006. Fish settlement in the ocean vs. estuary: comparison of pelagic larval and settled juvenile composition and abundance from southern New Jersey, USA. Est. Coast. Shelf Sci. 66: 280-290.

Hentschel, B.T. and A.A. Larson. 2006. Hydrodynamic mediation of density-dependent growth and adult-juvenile interactions of a spionid polychaete. Limnol. Oceanogr. 51(2): 1031-1037.

Bushek, D., Boyd, S. 2006. Seasonal abundance and occurence of the Asian isopod Synidotea laevidorsalis in Deleware Bay, USA. Biological Invasions. DOI 00:1-6. 10.1007/s10530-005-2890-5

Quigg, A., J.R. Reinfelder, and N.S. Fisher (2006) Copper uptake kinetics in diverse marine phytoplankton. Limnol. Oceanogr. 51: 893-899.

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Baxter, J. W., Dighton, J. 2005. Phosphorus source laters host plant response to ectomycorrhizal diversity. Mycorrhiza 15: 513-523

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Wang, H. X. Guo , G. Zhang and F. Zhang. 2004. Classification of jinjiang oysters Crassostrea rivularis (Gould, 1861) from China , based on morphology and phylogenetic analysis. Aquaculture, 242:137-155

Tanguy, A., X. Guo and S.E. Ford. 2004. Discovery of genes expressed in response to Perkinsus marinus challenge in eastern ( Crassostrea virginica ) and Pacific ( C. gigas ) oysters. Gene , 338:121-131.

Gong, N., H. Yang, G. Zhang, B.J. Landau and X. Guo . 2004. Chromosome inheritance in autotriploid Pacific oyster Crassostrea gigas Thunberg. Heredity , 93:408-415.

Yang, H. and X. Guo . 2004. Tetraploid induction by meiosis inhibition in the dwarf surfclam Mulinia lateralis : effects of cytochalasin B duration. Aquaculture Res. , 35:1187-1194.

Li, L. and X. Guo . 2004. AFLP-based genetic linkage maps of the Pacific oyster Crassostrea gigas Thunberg. Marine Biotechnology 6:26–36.

Wang, Y., Z. Xu and X. Guo . 2004. Differences in the rDNA-bearing chromosome divide the Asian-Pacific and Atlantic species of Crassostrea (Bivalvia, Mollusca). Biol. Bull. , 206:46-54.

Bergmann, T., G. Fahnenstiel, S. Lohrenz, D. Millie, O. Schofield . 2004. Impacts of a resuspension event and variable phytoplankton community composition on remote sensing reflectance . Journal of Geophysical Research . Vol. 109, C10S15, doi: 10.1029/2002JC001575.

Finkel, ZV , AJ Irwin, and O Schofield 2004. Resource limitation alters the 3/4 size scaling of metabolic rates in phytoplankton . Marine Ecology Progress Series . 273: 269-279.

Glenn, S., R. Arnone, T. Bergmann, W. P. Bissett, M. Crowley, J. Cullen, J. Gryzmski, D. Haidvogel, J. Kohut, M. Moline, M. Oliver, C. Orrico, R. Sherrell, T. Song, A. Weidemann, R. Chant, and O. Schofield . 2004. Biogeochemical impact of summertime coastal upwelling on the New Jersey Shelf. JGR , Vol. 109, C12S02, doi:10.1029/2003JC002265.

Glenn, S., O. Schofield, T. Dickey, R. Chant, J. Kohut, H. Barrier, J. Bosch, L. Bowers, L. Creed, C. Haldemann, E. , Hunter, J. Kerfoot, C. Mudgal, M. Oliver, H. Roarty, E. Romana, M. Crowley, D. Barrick, and C. Jones, 2004. The Expanding Role of Ocean Color & Optics in the Changing Field of Operational Oceanography. Oceanography .  107:86-95.

Gryzebyk, D., M.E. Katz, A.H. Knoll, A. Quigg, J.A. Raven, O. Schofield , F.J.R. Taylor 2004. Response to comment on "The evolution of modern eukaryotic phytplankton" Science , 306 (5705)

Kohut, J. T. , Glenn, S. M., Chant, R. J. 2004. Seasonal  current variability on the New Jersey inner shelf. Journal of Geophysical Research . 109, C07S07, doi: 10.1029/2003JC001963.

Lohrenz, S.E., G.L. Fahnenstiel, D.F. Millie, O. Schofield , T. Johengen, T. Bergmann 2004. Bio-Optical properties of psring phytoplankton communities in southeastern Lake Michigan and implications for regional primary production. Journal of Geophysical Research , Vol. 109, C10S14, doi: 10.1029/2004JC002383.

Moline, M., R . Arnone, T. Bergmann, S. Glenn, M. Oliver, C. Orrico, O. Schofield , S. Tozzi, 2004. Variability in Spectral Backscatter Estimated from Satellite and its Relation to In Situ Measurements in Optically Complex Coastal Waters . Journal of International Remote Sensing. 25:1,465-1,468..

Moline, M.A., S. Blackwell, R. Chant , M.J. Oliver , T. Bergmann, S. Glenn , O. Schofield 2004. Episodic physical forcing and the structure of phytoplankton communities in the coastal waters of New Jersey. Journal of Geophysical Research , Vol. 110, C12S05, doi: 10.1029/2003JC001985.

Moline, M.A., H. Claustre, T.K. Frazer, M. Vernet, O. Schofield 2004. Environmental forcing of phytoplankton community composition and potential impact on zooplankton in Antarctic coastal waters. Global Change Biology , doi: 10.1111/j.1365-2486.2004.00825. 1-8.

Oliver, M., Kohut, J. , Irwin, A., Schofield. O. , Glenn, S.M. , Moline, M. A. and Bissett, W.P. 2004. Bioinformatic Approaches for Objective detection of water masses . Journal Geophysical Research Vol 109 C07S04 doi: 10.1029/2003JC002072. 

Oliver, M. J ., Schofield, O. , Bergmann, T., Glenn, S. M. , Moline, M. A., Orrico, C. 2004. In-situ optically derived phytoplankton absorptioin properties in coastal waters and its utility for estimating primary productivity rates . Journal of Geophysical Research . 109, C07S11, doi: 10.1029/2002JC001627.

Schofield, O. , T. Bergmann, M. Oliver, A. Irwin, G. Kirkpatrick, W.P. Bissett, C. Orrico, M. Moline 2004. Inverting inherent optical signatures in the nearshore coastal waters at the Long Term Ecosystem Observatory: Journal of Geophysical Research Vol. 109, C12S04, doi: 10.1029/2003JC002071.

Schofield, O., S. M. Glenn 2004. On the evolution of coastal ocean observatories. Journal of Geophysical Research, 109, C12S01, doi: 10.1029/2004JC002577.

Schofield, O., Arnone, R., Bissett, W. P., Dickey, T., Davis, C., Finkel, Z., Oliver, M., Moline, M. A. 2004. Watercolors in the coastal zone: What can we see? Oceanography . 107: 28-37.

Schofield, O. , Tivey, M. 2004. Building a window to the sea: O cean R esearch I nteractive O bserving N etworks (ORION) . Oceanography . 17: 105-111.

Tozzi, S., Schofield, O., Falkowski, P. 2004. Historical climate change and ocean turbulence as selective agents for two key phytoplankton functional groups . Marine Ecology Progress Series . 274: 123 - 132.

Tozzi, S., Schofield , O ., Moline, M. A., Bergmann, T., Crowley, M., Arnone, R. 2004. Variability in measured and modeled remote sensing reflectance and comparison of SeaWiFS and in situ chloyophyll a distribution for coastal waters at LEO-15. International Journal of Remote Sensing . 5: 1469-1472.

Zheng, H. , G. Zhang, X. Liu, F. Zhang, and X. Guo . 2004. Different responses to selection in two stocks of the bay scallop, Argopecten irradians irradians Lamarck (1819). Journal Experimental Marine Biology Ecology, 313:213-223.

Kraeuter, J.N. S. Ford and W. Canzonier. 2003. Increased biomass yield from Delaware Bay oysters (Crassostrea virginica) by alternation of planting season. J. Shellfish Res. 22(1) 39-49.

Fegley, S. R., S. E. Ford, J. N. Kraeuter, and H. H. Haskin. 2003. The persistence of New Jersey's oyster seedbeds in the presence of MSX disease and harvest: management's role J. Shellfish Res. 22:451-464.

Chen, Y., J. R. Miller, J.A. Francis, G.G. Russell, and F. Aires, 2003: Observed and modeled relationships among Arctic climate variables. J. Geophys. Res., 108(D24), 4799, doi:10.1029/2003JD003824.

Rusch, A., M. Huettel, C. E. Reimers, G. L. Taghon, and C. M. Fuller. 2003. Activity and distribution of bacterial populations in Middle Atlantic Bight shelf sands. FEMS Microbiology Ecology 44:89-100.

Field, P. M. Sherrell, R. M. 2003. Direct determination of ultra-trace levels of metals in fresh water using desolvating micronebulization and HR-ICP-MS: application to Lake Superior waters. Royal Society of Chemistry. 18: 254-259.

Able, K.W. and S.M. Hagan. 2003. The impact of common reed, Phragmites australis , on Essential Fish Habitat: Influence on reproduction, embryological development and larval abundance of mummichog ( Fundulus heteroclitus ). Estuaries 26(1): 40-50.

Grothues, T.M. and K.W. Able.  2003.  Response of juvenile fish assemblages in tidal salt marsh creeks treated for Phragmites removal.  Estuaries 26(2B): 563-573.

Grothues, T.M. and K.W. Able.  2003.  Discerning vegetation and environmental correlates with subtidal marsh fish assemblage dynamics during Phragmites eradication efforts: interannual trend measures.  Estuaries 26(2B): 574-586

Jivoff, P.R. and K.W. Able.  2003.  Blue crab, Callinectes sapidus , response to the invasive common reed, Phragmites australis :  Abundance, size, sex ratio and molting frequency.  Estuaries. 26(2B): 587-595.

Jivoff, P. and K.W. Able.  2003.   Evaluating salt marsh restoration in Delaware Bay : the response of blue crabs, Callinectes sapidus , at former salt hay farms.  Estuaries 26(3): 709-719

Nemerson, D.M. and K.W. Able.  2003.  Spatial and temporal patterns in the distribution and feeding habits of Morone saxatilis , in marsh creeks of Delaware Bay , USA .   Fisheries Management and Ecology.   20: 337-348.

Light, P.R. and K.W. Able.  2003.  Juvenile menhaden ( Brevoortia tyrannus ) in Delaware Bay , USA , are the result of local and long-distance recruitment.  Est. Coast . Shelf Sci. 57: 1007-1014.

Duffy-Anderson, J.T., J. P. Manderson and K.W. Able.  2003. A characterization of juvenile fish assemblages around man-made structure in the New York-New Jersey harbor estuary, U.S.A.   Bulletin of Marine Science 72(3): 877-889.

Sullivan, M.C., R.K. Cowen, K.W. Able, and M.P. Fahay.  2003.  Effects of anthropogenic and natural disturbance on a recently settled continental shelf flatfish. Mar. Ecol. Prog. Ser. 260: 237-253.

Smith, K.J. and K.W. Able.  2003.  Dissolved oxygen dynamics in salt marsh pools and its potential impacts on fish assemblages.  Mar. Ecol. Prog. Ser. 258: 223-232.

Bell , G.W., D.A. Witting and K.W. Able.  2003  Aspects of metamorphosis and habitat use in the Conger eel,  Conger oceanicus . Copeia. 2003(3):544-552.

Teo, S.L.H. and K.W. Able.  2003.  Habitat use and movement of the mummichog ( Fundulus heteroclitus ) in a restored salt marsh.  Estuaries 26(3): 720-730.

Raichel, D.L., K.W. Able, and J.M. Hartman.  2003.  The influence of Phragmites (common reed) on the distribution, abundance and potential prey of a resident marsh fish in the Hackensack Meadowlands, New Jersey .  Estuaries 26(2B): 511-521.

Able, K.W., S. M. Hagan and S.A. Brown. 2003. Mechanisms of marsh habitat alteration due to Phragmites : Response of young-of-the-year mummichog ( Fundulus heteroclitus ) to treatment for Phragmites removal. Estuaries May 22, 200326(2B): 484-494.

Teo, S.L.H. and K.W. Able. 2003. Growth and production of the common mummichog ( Fundulus heteroclitus ) in a restored salt marsh. Estuaries 26(1): 51-63.

Gillanders, B.M., K.W. Able, J.A. Brown, D.B. Eggleston and P. F. Sheridan. 2003. Evidence of connectivity between juvenile and adult habitats for mobile marine fauna: an important component of nurseries. Marine Ecology Progress Series 247: 281-295.

Martino, E. and K.W. Able. 2003. Fish assemblages across the marine to low salinity transition zone of a temperate estuary. Estuarine, Coastal and Shelf Science 56(5-6): 967-985.

Hagan, S.M. and K.W. Able. 2003. Seasonal changes of the pelagic fish assemblage in a temperate estuary. Est. Coast. Shelf Sci. 56(1): 15-29.

Currin, C.A., S.C. Wainright, K.W. Able, M.P. Weinstein and C.M. Fuller. 2003. Determination of food web support and trophic position of the mummichog, Fundulus heteroclitus , in New Jersey smooth cordgrass ( Spartina alterniflora ), common reed ( Phragmites australis ) and restored salt marshes. Estuaries 26(2B): 495-510

Neuman, M.J. and K.W. Able. 2003. Inter-cohort differences in spatial and temporal settlement patterns of young-of-the-year windowpane, Scophthalmus aquosus , in southern New Jersey. Est. Coast. Shelf Sci. 56: 527-538.

Able, K.W., P. Rowe, M. Burlas, and D. Byrne. 2003. Use of ocean and estuarine habitats by young-of-year bluefish ( Pomatomus saltatrix ) in the New York Bight Fish. Bull 101: 201-214.

Minello, T.J., K.W. Able, M.P. Weinstein and C.G. Hays. 2003. Salt marshes as nurseries for nekton: testing hypotheses on density, growth, and survival through meta-analysis. Marine Ecology Progress Series. 246: 39-59.

Diaz, R.J., G.R. Cutter and K.W. Able. 2003. The importance of physical and biogenic structure to juvenile fishes on the shallow inner continental shelf. Estuaries 26(1): 12-20.

Warlen, S.M., K.W. Able and E. Laban. 2003. Recruitment of larval Atlantic menhaden (Brevoortia tyrannus) to North Carolina and New Jersey estuaries: evidence for larval transport northward along the east coast of the United States. Fish. Bull 100(3): 609-623.

Miller, M.J., D.N. Nemerson and K.W. Able. 2003. Seasonal distribution, abundance and growth of young-of-the-year Atlantic croaker, Micropogonias undulatus , in Delaware Bay and adjacent marshes. Fish. Bull. 101(1): 100-115.

Beck, M.W., K.L. Heck Jr., K.W. Able, D.L. Childers, D.B. Eggleston, B. M. Gillanders, B.S. Halpern, C.G. Hayes, K. Hoshino, T.J. Minello, R.J. Orth, P.F. Sheridan and M.P. Weinstein. 2003. The role of nearshore ecosystems as fish and shellfish nurseries. Issues in Ecology 11: 1-12.

Ammerman, J. W., Hood R. R., Case, D. A., and J. B. Cotner. 2003. Phosphorus deficiency in the Atlantic: An emerging paradigm in oceanography.  EOS (Transactions, American Geophysical Union) 84: 165,170.

Nikolaus, R., Ammerman, J. W., and I. R. MacDonald. 2003. Distinct pigmentation and trophic modes in Beggiatoa from hydrocarbon seeps in the Gulf of Mexico.  Aquatic Microbial Ecology 32:85-93.

Kennish, M. J. 2003. Jacques Cousteau National Estuarine Research Reserve. In: Kennish, M. J. (ed.) Estuarine Research, Monitoring, and Resource Protection. CRC Press, Boca Raton, Florida, pp. 57-113.

Kennish, M. J. 2003. Tijuana River National Estuarine Research Reserve. In: Kennish, M. J. (ed.) Estuarine Research, Monitoring, and Resource Protection. CRC Press, Boca Raton, Florida, pp. 233-258.

Won, Y-J, C.R. Young, R.A. Lutz, R.C. Vrijenhoek. 2003. Dispersal barriers and isolation among deep-sea mussel populations (Mytilidae: Bathymodiolus) from eastern Pacific hydrothermal vents. Molecular Ecology, 12:169-184.

Lutz, R.A., 2003. Dawn in the Deep. National Geographic Magazine, 203(2):92-103.

Hurtado, L.A. , M. Mateos, R.A. Lutz, R.C. Vrijenhoek. 2003. Coupling of bacterial endosymbiont and host mitochondrial genomes in the hydrothermal vent clam C. magnifica. Appl. Environ. Microbiol., 69(4):2058-2064.

Vetriani, C., M.D. Speck, S.V Ellor, R.A. Lutz, V. Starovoytov. 2003. Thermovibrio ammoniificans sp. nov., a thermophilic, chemolithotrophic, nitrate ammonifying baceterium from deep-sea hydrothermal vents. IJSEM, 54:175-181.

Kennish, M. J. and S. M. Haag. 2003. Epibenthic community monitoring in New Jersey coastal bays: a priority initiative of estuarine research programs. Bulletin of the New Jersey Academy of Science, 48:11-15.

Kraeuter, J. N., M. J. Kennish, J. Dobarro, S. R. Fegley, and G. E. Flimlin, Jr. 2003. Rehabilitation of the northern quahog (hard clam) (/Mercenaria mercenaria/) habitats by shelling - 11 years in Barnegat Bay, New Jersey. Journal of Shellfish Research, 22:61-67.

Seitzinger, S.P., R.M. Styles, R. Lauck and M.A. Mazurek. 2003.  Atmospheric pressure mass spectrometry: a new analytical chemical characterization method for dissolved organic matter in rainwater . Environ. Science Technol. 37: 131-137.

Wiegner, T.N. and S.P. Seitzinger, D.L. Breitburg, and J. G. Sanders. 2003.  The effect of multiple stressors on the balance between autotrophic and heterotrophic processes in an estuarine system.  Estuaries 26 (2A):352-364.

Yan,W.J., S.Zhang, P.Sun, and S.P.Seitzinger. 2003. How do nitrogen inputs to the Changjiang basin impact the Changjiang River nitrate: A temporal analysis for 1968-1997. Global Biogeochemical Cycles 17(4):1091-1100.

Hartnett, H.A. and S.P. Seitzinger. 2003. High-resolution nitrogen gas profiles in sediment porewaters using a new membrane probe for membrane-inlet mass spectrometry (MIMS).  Marine Chemistry 67:247-264.

Vetriani, C., Tran, H.V., and Kerkhof, L.J. (2003) Fingerprinting Microbial Assemblages from the Oxic/Anoxic Chemocline of the Black Sea. Appl. Environ. Microbiol. 69:6381-6488.

Iskandarani, M., D. Haidvogel, and J. Levin, 2003, A three-dimentional spectral element model for the solution of the hydrostatic primitive equations, Journal of Computational Physics, 186 : 397-425

Rusch, A., M. Huettel, C. E. Reimers, G. L. Taghon, and C. M. Fuller. 2003. Activity and distribution of bacterial populations in Middle Atlantic Bight shelf sands. FEMS Microbiology Ecology 44:89-100.

Ahn, Y. B., S. K. Rhee, D. E. Fennell, L. J. Kerkhof, U. Hentschel, and M. M. Häggblom. 2003. Reductive Dehalogenation of Brominated Phenolic Compounds by Microorganisms Associated with the Marine Sponge Aplysina aerophoba. Appl. Environ. Microbiol. 69: 4159-4166

Rhee, S.K., D. Fennell, M. Haggblom, and L. Kerkhof. 2003. Detection by PCR of reductive dehalogenase motifs in a sulfidogenic 2-bromophenol-degrading consortium enriched from estuarine sediment. FEMS Micro. Ecol. 43: 317-324.

Falkowski, P. G. and D. Tchernov. 2003. Human footprint on the ecological landscape. In. Earth System Analysis for Sustainabilty, ed, J. Schellnhuber. Springer-Verlag , Berlin.

Falkowski PG, Laws EA, Barber RT, Murray JW. 2003. Phytoplankton and their role in Primary, New, and Export Production. (Chapter 4) In Ocean Biogeochemistry: The Role of the Ocean Carbon Cycle in Global Change. [Ed] MJR Fasham. Global Change - The IGBP Series.

Koblizek M, etal. 2003. Isolation and characterization of Erythrobacter sp. strains from the upper ocean. Arch Microbiol. 180: 327-338.

Grzebyk, D., O. Schofield, C. Vetriani, and P. G. Falkowski. 2003. The Mesozoic radiation of eukaryotic algae: The portable plastid hypothesis. J. Phycol. 39:259-267.

Quigg, A. Finkel, Z.V. Irwin, A.J. Reinfelder, J.R. Rosenthal, Y. Ho,T-Y. Schofield, O. Morel, F.M.M. and Falkowski, P.G. 2003 The evolutionary inheritance of elemental stoichiometry in marine phytoplankton.Nature 425: 291-294.

Yu, Z. and X. Guo. 2003. Genetic linkage map of the eastern oyster Crassostrea virginica Gmelin. Biol. Bull. 204: 327–338.

Chiswell, S., J. Wilkin , J. D. Booth and B. Stanton 2003, Trans-Tasman Sea larval transport: Is Australia a source for New Zealand lobsters? Marine Ecology Progress Series , 247, 173-182.

Creed, E., Kerfoot, J., Mudgal, C., Glenn, S., Schofield , O., Jones, C., Webb, D., Campbell, T., Twardowski, M., Kirkpatrick, G., J. Hillier, 2003. Automated control of a fleet of Slocum Gliders within an operational coastal observatory, Oceans 2003 MTS/IEEE Conference Proceedings, San Diego, CA, V1, pp. 726-730.

Glenn, S.M . and T.D. Dickey, eds., 2003. SCOTS: Scientific Cabled Observatories for Time Series, NSF Ocean Observatories Initiative (OOI) Workshop Report, Portsmouth, VA, 80 pp.

Glenn, S.M. and O. Schofield , 2003. Observing the Oceans from the COOL Room: Our History, Experience, and Opinions , Oceanography , V16, N4, pp. 37-52.

Grzebyk, D., Schofield, O. , Vetriani, C., Falkowski, P. 2003. The Mesozoic radiation of eukaryotic algae: the portable plastid hypothesis . Journal of Phycology 39: 259-267.

Johnson, D. M., Miller, J., Schofield , O . 2003. Dynamics and optics of the Hudson River outflow plume. Journal of Geophysical Research. 108, NO. C10, 3323, doi:10.1029/2002JC001485 . 1-9.

Kirkpatrick, G. J., Orrico, C., Moline, M. A., Oliver, M. J. , Schofield, O. 2003. Continuous hyperspectral absorption measurements of colored dissolved organic material in aquatic systems. Applied Optics 42(33): 6564-6568.

Kohut, J. T. and S. M. Glenn , 2003. Calibration of HF radar surface current measurements using measured antenna beam patterns . Journal of Atmospheric and Ocean Techology, 1303-1316.

Millie, D. F., G. L. Fahnenstiel, Steven E. Lohrenz, H. J. Carrick, T. Johengen, and O. M. E. Schofield (2003) Physical-biological coupling in southeastern Lake Michigan: Influence of episodic sediment resuspension on phytoplankton. Aquatic Ecology, 37, 393-408.

Quigg, A., Finkel, Z.V. , Irwin, A.J., Rosenthal, T., Ho, T-Y., Reinfelder, J.R., Schofield, O. , Morel, F.M., Falkowski, P.G. 2003. The evolutionary inheritance of elemental stoichiometry in marine phytoplankton . Nature 425: 291-294.

Styles, R., and S.M. Glenn , 2003. A theoretical investigation of bed-form shapes, Ocean Dynamics, 53, 278-287.

Schofield, O. , Bissett, W. P., Frazer, T. K., Iglesias-Rodriguez, D., Moline, M. A., Glenn, S . 2003. Development of regional coastal ocean observatories and the potential benefits to marine sanctuaries. Marine Technology Society 37: 54-67.

Schofield , O. , Chant, R., Kohut, J. T., Glenn, S. M . 2003. The evolution of a nearshore coastal observatory and the establishment of the New Jersey Shelf Observing System. Sea Technology 44(11): 52-58.

Peliz, A., J. Dubert, D. B. Haidvogel, 2003, Subinertial Response of a Density-Driven Eastern Boundary Poleward Current to Wind Forcing , Journal of Physical Oceanography (JPO) 33  : 1633-1650

Peliz, A., J. Dubert, D.B. Haidvogel, and B. Le Cann, 2003. Generation and unstable evolution of a density-driven Eastern Poleward Current: The Iberian Poleward Current, Journal of Geophysical Research 108, NO. C8, 3268, doi:10.1029/2002JC001443

Yu, Z., X. Kong, L. Zhang, X. Guo, J. Xiang. 2003. Taxonomic status of four C rassostrea oysters from China as inferred from mitochondrial DNA sequences. J. Shellfish Res. , 22(1):31-38.

Allam, B., C. Paillard and S. E. Ford. 2002. Pathogenicity of Vibrio tapetis, the etiological agent of Brown Ring Disease in clams. Dis. Aquat.
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Ford, S. E., J. N. Kraeuter, R. D. Barber and G. Mathis. 2002. Aquaculture-associated factors in QPX disease of hard clams: density and seed-source. Aquaculture 208:23-38.

Allam, B., K. Ashton-Alcox and S. E. Ford. 2002. Flow cytometric comparison of haemocytes from three species of bivalve molluscs. Fish Shellfish Immunol. 13:141-158.

Allam, B., K. Ashton-Alcox and S. E. Ford. 2002. Flow cytometric measurement of hemocytes viability and phagocytic activity in the clam Ruditapes phllippinarum. J. Shellfish Res. 21(1):13-19.

Francis, J.A., 2002: Validation of reanalysis upper-level winds in the Arctic with independent rawinsonde data, Geophys. Res. Lett., 29, 10.1029/2001GL014578.

Groves, D.G. and J.A. Francis, 2002: The moisture budget of the Arctic atmosphere from TOVS satellite data, J. Geophys. Res., D19, 4391, doi:10.1029/2001JD001191.

Groves, D.G. and J.A. Francis, 2002: Variability of the Arctic Atmospheric Moisture Budget from TOVS Satellite Data, J. Geophys.
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Chen, Y., J.A. Francis, and J. R. Miller, 2002: Surface temperature of the Arctic: comparison of TOVS satellite retrievals with surface observations, J. Clim., 15, 3698-3708.

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Gao, Y., Nelson, E. D., field, M. P., Ding, Q., Li, H., Sherrell, R. M., Gigliotti, C. L., van Ry, D. A., Glenn T. R., Eisenreich, S. J. 2002. Characterization of atmospheric trace elements on PM2.5 particulate matter over the New York-New Jersey harbor estuary. Atmospheric Environment 36: 1077-1086.

Sikes, E. L. and M-A. Sicre, 2002, The relationship of the tetra-unsaturated C 37 alkenone to salinity and temperature: implications for paleo studies, Geochem., Geophys., Geosys. , 3 (11),doi: 10.1029/2002GC000345.

Sikes, E. L., W.R. Howard, H. L. Neil and J.K. Volkman, 2002,  Glacial-interglacial sea surface temperature changes across the subtropical front east of New Zealand based on alkenone unsaturation ratios and foraminiferal assemblages, Paleoceaongraphy , 17 (2) , 10.1029/2001PA000640.

Bushek, D. S.E. Ford and M.M Chintala. 2002. Comparison of in vitro cultured and wild-type Perkinsus marinus III. Fecal elimination and its role in transmission. Dis. Aquat. Org., 51:217-225.

Ford, S.E., M.M.Chintala, and D. Bushek. 2002. Comparison of in vitro cultured and wild-type Perkinsus marinus I. Pathogen Virulence. Dis. Aquat. Org., 51:187-201.

Chintala, M.M., D. Bushek, and S.E. Ford. 2002. Comparison of in vitro cultured and wild-type Perkinsus marinus II. Dosing methods and host response. Dis. Aquat. Org., 51:203-216.

Miller, M.J. and K.W. Able. 2002. Movements and growth of tagged young-of-the-year Atlantic croaker, Micropogonias undulatus, in restored and reference marsh creeks in Delaware Bay. J. Exp. Mar. Biol. Ecol. . 267: 15-38.

McBride, R.S., M.P. Fahay and K.W. Able. 2002. Larval and settlement periods of the northern searobin (Prionotus carolinus) and the striped searobin (P. evolans). Fish. Bull. 100:63-73.

Goldberg, R., B. Phelan, J. Pereira, S. Hagan, P. Clark, A. Bejda, A. Calabrese, A. Studholme and K.W. Able. 2002. Variability in the distribution and abundance of young-of-the-year winter flounder, Pseudopleuronectes americanus, across habitat types in three northeastern U.S. estuaries. Estuaries 25: 215-226.

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Able, K.W. 2002. Sea snails: Family Liparidae. pp. 368-374 In B.B. Collette and G. Klein-MacPhee (eds.) Bigelow and Scroeder’s Fishes of the Gulf of Maine. Smithsonian Institution Press, 3rd edition.

Able, K.W. 2002. Tilefishes: Family Malacanthidae. pp. 397-400 In B.B. Collette and G. Klein-MacPhee (eds.) Bigelow and Scroeder’s Fishes of the Gulf of Maine. Smithsonian Institution Press, 3rd edition.

Able, K.W., M.P. Fahay, K.L. Heck Jr., C.T. Roman, M.A. Lazzari and S.C. Kaiser. 2002. Seasonal distribution and abundance of fishes and decapod crustaceans in a Cape Cod estuary. Northeastern Naturalist 9(3): 285-302.

Able, K.W. and R.K. Cowen. 2002. Seasonal distribution and abundance of lobster (Homarus americanus) postlarvae in the New York Bight and an adjacent estuary. Bulletin of the New Jersey Academy of Sciences 47(2): 15-20.

Miller, M.J., P. M. Rowe and K.W. Able. 2002. Occurrence and growth rates of young-of-year northern kingfish, Menticirrhus saxatilis, on ocean and estuarine beaches in southern New Jersey. Copeia 3: 815-823.

Neuman, M.J. and K.W. Able. 2002. Quantification of ontogenetic transitions during the early life of a flatfish, windowpane, Scophthalmus aquosus (Pleuronectiformes Scophthalmidae). Copeia 3: 597-609.

Curran, M.C. and K.W. Able. 2002. Annual stability in the use of coves near inlets as settlement areas for winter flounder (Pseudopleuronectes americanus). Estuaries 25(2): 227-234.

Chant, R. J . 2002. Secondary flows in a region of flow curvature: relationship with tidal forcing and river discharge. Journal of Geophysical Research. 10.1029/2001JC001082, 21.

Ammerman, J.W. 2002. Phosphorus cycling in aquatic environments: Role of Bacteria. In, The Encyclopedia of Environmental Microbiology (G. Bitton, ed.). Vol. 5: 2448-2453.  John Wiley & Sons, Inc.

Stocks, K.I. 2002. Flume experiments on post-settlement movement in polychaetes. Journal of Marine Research 60: 743-762

Lutz, R.A., T. Shank, P. Rona, A. Reed, W. Lange, S. Low, E. Kristof. 2002. Recent advances in imaging deep-sea hydrothermal vents . Cahiers de Biologie Marine, 43:267-269.

Chevaldonne, P., D. Jollivet, D. Desbruyeres, R.A. Lutz, R.C. Vrijenhoek. 2002. Sister-species of eastern Pacific hydrothermal-vent worms (Ampharetidae, Alvinellidae, Vestimentifera) provide new mitochondrial COI clock calibration. Cahiers de Biologie Marine, 43:367-370.